Janković, Radmila

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  • Janković, Radmila (2)
  • Janković, Radmila N (1)
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Author's Bibliography

Detection of DNA mutations based on analysis of multiple wavelength excitation/emission fluorescence kinetics curves in real-time PCR

Jovanović, Katarina K; Savić, Aleksandar G; Janković, Radmila N; Radulović, Sinisa S; Spasić, Slađana; Radotić, Ksenija

(Churchill Livingstone, Edinburgh, 2013)

TY  - JOUR
AU  - Jovanović, Katarina K
AU  - Savić, Aleksandar G
AU  - Janković, Radmila N
AU  - Radulović, Sinisa S
AU  - Spasić, Slađana
AU  - Radotić, Ksenija
PY  - 2013
UR  - http://rimsi.imsi.bg.ac.rs/handle/123456789/702
AB  - The key method for therapies of various cancer types could be the molecular-targeted therapy, based on individual gene profile for each patient. One of the main procedures used for genetic testing is the real-time polymerase chain reaction (real-time PCR). Physical principle behind real-time PCR procedure is the fluorescence. Fluorescence labeled probes (primers) is attached to quenchers. Upon reaction of polymerization, quenchers are removed, and the fluorescence emission intensity increases in time. Emission spectra shape and its maximum position can differ if the fluorophore was present in different microenvironment. That property is widely exploited in fluorescence spectroscopy and chromatography. This paper, for the first time, describes utilization of full spectroscopic potential of multichannel excitation/emission filter sets in real-time PCR device. Instead of monitoring fluorescence intensity in time for a single fluorescence emission channel, the ratio values of three different kinetics curves were calculated and analyzed by applying k-means clustering and dendrogram analysis. Obtained results have shown that described analytical improvement provides identification of nine different groups of mutations if the commercial QIAGEN (R) EGFR PCR Kit was used. Method can be applied to any kit, capable to simultaneously detect several different mutations.
PB  - Churchill Livingstone, Edinburgh
T2  - Medical Hypotheses
T1  - Detection of DNA mutations based on analysis of multiple wavelength excitation/emission fluorescence kinetics curves in real-time PCR
EP  - 379
IS  - 4
SP  - 376
VL  - 80
DO  - 10.1016/j.mehy.2013.01.004
ER  - 
@article{
author = "Jovanović, Katarina K and Savić, Aleksandar G and Janković, Radmila N and Radulović, Sinisa S and Spasić, Slađana and Radotić, Ksenija",
year = "2013",
abstract = "The key method for therapies of various cancer types could be the molecular-targeted therapy, based on individual gene profile for each patient. One of the main procedures used for genetic testing is the real-time polymerase chain reaction (real-time PCR). Physical principle behind real-time PCR procedure is the fluorescence. Fluorescence labeled probes (primers) is attached to quenchers. Upon reaction of polymerization, quenchers are removed, and the fluorescence emission intensity increases in time. Emission spectra shape and its maximum position can differ if the fluorophore was present in different microenvironment. That property is widely exploited in fluorescence spectroscopy and chromatography. This paper, for the first time, describes utilization of full spectroscopic potential of multichannel excitation/emission filter sets in real-time PCR device. Instead of monitoring fluorescence intensity in time for a single fluorescence emission channel, the ratio values of three different kinetics curves were calculated and analyzed by applying k-means clustering and dendrogram analysis. Obtained results have shown that described analytical improvement provides identification of nine different groups of mutations if the commercial QIAGEN (R) EGFR PCR Kit was used. Method can be applied to any kit, capable to simultaneously detect several different mutations.",
publisher = "Churchill Livingstone, Edinburgh",
journal = "Medical Hypotheses",
title = "Detection of DNA mutations based on analysis of multiple wavelength excitation/emission fluorescence kinetics curves in real-time PCR",
pages = "379-376",
number = "4",
volume = "80",
doi = "10.1016/j.mehy.2013.01.004"
}
Jovanović, K. K., Savić, A. G., Janković, R. N., Radulović, S. S., Spasić, S.,& Radotić, K.. (2013). Detection of DNA mutations based on analysis of multiple wavelength excitation/emission fluorescence kinetics curves in real-time PCR. in Medical Hypotheses
Churchill Livingstone, Edinburgh., 80(4), 376-379.
https://doi.org/10.1016/j.mehy.2013.01.004
Jovanović KK, Savić AG, Janković RN, Radulović SS, Spasić S, Radotić K. Detection of DNA mutations based on analysis of multiple wavelength excitation/emission fluorescence kinetics curves in real-time PCR. in Medical Hypotheses. 2013;80(4):376-379.
doi:10.1016/j.mehy.2013.01.004 .
Jovanović, Katarina K, Savić, Aleksandar G, Janković, Radmila N, Radulović, Sinisa S, Spasić, Slađana, Radotić, Ksenija, "Detection of DNA mutations based on analysis of multiple wavelength excitation/emission fluorescence kinetics curves in real-time PCR" in Medical Hypotheses, 80, no. 4 (2013):376-379,
https://doi.org/10.1016/j.mehy.2013.01.004 . .
1
1
1

Analysis of real-time PCR kinetics based on single channel florescence and factor analysis

Janković, Radmila; Jovanović, Katarina; Radulović, Siniša; Savić, Aleksandar; Spasić, Slađana; Radotić, Ksenija

(Biophysical Society of Serbia, Srbija, 2012)

TY  - CONF
AU  - Janković, Radmila
AU  - Jovanović, Katarina
AU  - Radulović, Siniša
AU  - Savić, Aleksandar
AU  - Spasić, Slađana
AU  - Radotić, Ksenija
PY  - 2012
UR  - http://rimsi.imsi.bg.ac.rs/handle/123456789/2848
PB  - Biophysical Society of Serbia, Srbija
C3  - Regional Biophysics Conference 2012
T1  - Analysis of real-time PCR kinetics based on single channel florescence and factor analysis
EP  - 59
SP  - 57
UR  - https://hdl.handle.net/21.15107/rcub_rimsi_2848
ER  - 
@conference{
author = "Janković, Radmila and Jovanović, Katarina and Radulović, Siniša and Savić, Aleksandar and Spasić, Slađana and Radotić, Ksenija",
year = "2012",
publisher = "Biophysical Society of Serbia, Srbija",
journal = "Regional Biophysics Conference 2012",
title = "Analysis of real-time PCR kinetics based on single channel florescence and factor analysis",
pages = "59-57",
url = "https://hdl.handle.net/21.15107/rcub_rimsi_2848"
}
Janković, R., Jovanović, K., Radulović, S., Savić, A., Spasić, S.,& Radotić, K.. (2012). Analysis of real-time PCR kinetics based on single channel florescence and factor analysis. in Regional Biophysics Conference 2012
Biophysical Society of Serbia, Srbija., 57-59.
https://hdl.handle.net/21.15107/rcub_rimsi_2848
Janković R, Jovanović K, Radulović S, Savić A, Spasić S, Radotić K. Analysis of real-time PCR kinetics based on single channel florescence and factor analysis. in Regional Biophysics Conference 2012. 2012;:57-59.
https://hdl.handle.net/21.15107/rcub_rimsi_2848 .
Janković, Radmila, Jovanović, Katarina, Radulović, Siniša, Savić, Aleksandar, Spasić, Slađana, Radotić, Ksenija, "Analysis of real-time PCR kinetics based on single channel florescence and factor analysis" in Regional Biophysics Conference 2012 (2012):57-59,
https://hdl.handle.net/21.15107/rcub_rimsi_2848 .

Advanced analysis of multi channel real-time PCR kinetics

Janković, Radmila; Katarina, Jovanović; Radulović, Siniša; Savić, Aleksandar; Spasić, Slađana; Radotić, Ksenija

(Biophysical Society of Serbia, Srbija, 2012)

TY  - CONF
AU  - Janković, Radmila
AU  - Katarina, Jovanović
AU  - Radulović, Siniša
AU  - Savić, Aleksandar
AU  - Spasić, Slađana
AU  - Radotić, Ksenija
PY  - 2012
UR  - http://rimsi.imsi.bg.ac.rs/handle/123456789/2823
PB  - Biophysical Society of Serbia, Srbija
C3  - Regional Biophysics Conference
T1  - Advanced analysis of multi channel real-time PCR kinetics
UR  - https://hdl.handle.net/21.15107/rcub_rimsi_2823
ER  - 
@conference{
author = "Janković, Radmila and Katarina, Jovanović and Radulović, Siniša and Savić, Aleksandar and Spasić, Slađana and Radotić, Ksenija",
year = "2012",
publisher = "Biophysical Society of Serbia, Srbija",
journal = "Regional Biophysics Conference",
title = "Advanced analysis of multi channel real-time PCR kinetics",
url = "https://hdl.handle.net/21.15107/rcub_rimsi_2823"
}
Janković, R., Katarina, J., Radulović, S., Savić, A., Spasić, S.,& Radotić, K.. (2012). Advanced analysis of multi channel real-time PCR kinetics. in Regional Biophysics Conference
Biophysical Society of Serbia, Srbija..
https://hdl.handle.net/21.15107/rcub_rimsi_2823
Janković R, Katarina J, Radulović S, Savić A, Spasić S, Radotić K. Advanced analysis of multi channel real-time PCR kinetics. in Regional Biophysics Conference. 2012;.
https://hdl.handle.net/21.15107/rcub_rimsi_2823 .
Janković, Radmila, Katarina, Jovanović, Radulović, Siniša, Savić, Aleksandar, Spasić, Slađana, Radotić, Ksenija, "Advanced analysis of multi channel real-time PCR kinetics" in Regional Biophysics Conference (2012),
https://hdl.handle.net/21.15107/rcub_rimsi_2823 .